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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
900
ChIP-seq
231
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1215
Transcription
900
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
242
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1876
bam
1766
bigWig
1074
tsv
960
bed narrowPeak
555
bigBed narrowPeak
346
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
67
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2623
Homo sapiens
Biosample type
2631
tissue
849
primary cell
634
cell line
347
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
454
pancreas
361
liver
313
heart
297
kidney
265
brain
133
blood vessel
133
vasculature
122
limb
82
musculature of body
74
bone element
73
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2561
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1853
GRCh38
1731
hg19
Lab
2331
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2019
assay_title!
RNA microarray
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
2631 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
39
1
4
1
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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