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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
Assay category
22
DNA binding
Target of assay
1009
histone modification
1008
histone
510
narrow histone mark
497
broad histone mark
492
transcription factor
339
control
105
RNA binding protein
89
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
January, 2019
3
August, 2017
3
December, 2017
3
November, 2018
2
December, 2018
Available data
22
bam
22
bed narrowPeak
22
bigWig
22
fastq
20
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
16
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
15
liver
4
blood
4
bodily fluid
2
connective tissue
1
epithelium
Project
22
AMP
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
22
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
13
inconsistent control read length
inconsistent control run_type
month_released!
January, 2019
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
cell line
HepG2
12
GM12878
4
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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