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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
MeRIP-seq
Assay category
29
DNA binding
Target of assay
773
histone modification
772
histone
490
transcription factor
396
narrow histone mark
375
broad histone mark
304
control
98
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
January, 2019
5
November, 2020
3
December, 2017
2
August, 2017
2
December, 2018
Available data
29
bam
29
bed narrowPeak
29
bigWig
29
fastq
27
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
27
cell line
4
tissue
3
in vitro differentiated cells
primary cell
Organ
23
liver
5
pancreas
4
blood
4
bodily fluid
4
epithelium
2
connective tissue
Project
34
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
29
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent control
3
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
20
GM12878
4
EndoC_BH1
3
tissue
islet of Langerhans
2
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
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