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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
Assay category
466
DNA binding
110
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
347
transcription factor
89
recombinant protein
77
control
59
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
447
bam
402
fastq
396
bigWig
377
bed narrowPeak
338
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
466
Homo sapiens
Biosample type
860
tissue
466
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
42
blood
42
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
464
AMP
2
T1D
Genome assembly (visualization)
392
hg19
331
GRCh38
Lab
448
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
466 results
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ChIP-seq
cell line
HepG2
378
GM12878
42
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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