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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
99
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
396
DNA binding
99
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
342
transcription factor
88
recombinant protein
57
RNA binding protein
36
histone
36
histone modification
24
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
559
bam
502
bigWig
404
fastq
389
bed narrowPeak
340
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
502
Homo sapiens
Biosample type
1726
tissue
613
primary cell
502
cell line
259
in vitro differentiated cells
3
stem cell
Organ
327
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
40
blood
40
bodily fluid
12
kidney
8
embryo
Project
498
AMP
4
T1D
Genome assembly (visualization)
497
hg19
434
GRCh38
Lab
488
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
January, 2019
BIOSAMPLE
ASSAY
502 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
2
GM12878
39
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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