Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
8
snATAC-seq
5
total RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
77
DNA binding
12
DNA accessibility
5
Transcription
Target of assay
37
transcription factor
24
histone
24
histone modification
16
broad histone mark
14
control
8
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
Date released
42
October, 2019
27
December, 2018
January, 2019
15
November, 2018
8
January, 2021
1
February, 2020
1
January, 2018
Available data
84
bam
71
bigWig
66
bed narrowPeak
65
bigBed narrowPeak
42
fastq
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
94
Homo sapiens
Biosample type
43
cell line
43
tissue
8
primary cell
Organ
939
pancreas
784
liver
683
connective tissue
519
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
21
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
8
T1D
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
86
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2019
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
GM12878
42
1
tissue
tibial nerve
35
5
1
2
primary cell
peripheral blood mononuclear cell
8
Download