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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
Assay category
30
DNA binding
Target of assay
975
histone modification
974
histone
496
narrow histone mark
495
transcription factor
477
broad histone mark
339
control
103
RNA binding protein
89
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
30
bam
30
bed narrowPeak
30
bigWig
30
fastq
28
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
30
Homo sapiens
Biosample type
24
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
4
blood
4
bodily fluid
2
connective tissue
1
epithelium
Project
30
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
cell line
HepG2
20
GM12878
4
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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