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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
13
ATAC-seq
12
single cell RNA-seq
6
WGBS
3
ChIP-seq
2
pCHi-C
Assay category
40
DNA accessibility
12
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
134
May, 2022
107
February, 2023
94
May, 2021
63
February, 2021
58
May, 2020
56
September, 2020
47
November, 2017
43
August, 2021
33
August, 2017
25
October, 2019
15
March, 2020
10
December, 2017
9
July, 2019
9
November, 2019
8
February, 2018
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2023
5
November, 2018
4
October, 2022
January, 2019
2
December, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
September, 2018
Available data
120
bam
bigWig
107
tsv
45
fastq
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
63
Homo sapiens
Biosample type
tissue
46
primary cell
13
cell line
4
in vitro differentiated cells
Organ
10
artery
10
blood vessel
10
heart
10
vasculature
6
epithelium
6
pancreas
5
connective tissue
2
liver
Project
45
HPAP
18
AMP
Genome assembly (visualization)
15
hg19
9
GRCh38
Lab
45
Klaus Kaestner, Upenn
18
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
month_released!
January, 2019
files.file_type!
bigWig
biosample_type!
tissue
BIOSAMPLE
ASSAY
63 results
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Clear Filters
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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