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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
total RNA-seq
2
pCHi-C
1
ATAC-seq
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
401
tsv
44
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
64
Homo sapiens
Biosample type
64
tissue
1
in vitro differentiated cells
Organ
267
pancreas
223
kidney
171
epithelium
169
liver
133
heart
100
connective tissue
93
bone element
65
adipose tissue
63
brain
46
vasculature
45
blood vessel
31
limb
28
musculature of body
24
eye
21
artery
20
lung
12
nerve
11
blood
11
bodily fluid
8
embryo
8
skeleton
8
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
January, 2019
February, 2023
files.file_type!
bigWig
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
WGBS
total RNA-seq
pCHi-C
ATAC-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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