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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
42
ATAC-seq
17
ChIP-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
112
Transcription
42
DNA accessibility
17
DNA binding
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
4
transcription factor
Date released
89
May, 2021
33
August, 2021
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
264
bam
254
bigWig
131
bed narrowPeak
127
tsv
fastq
25
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
179
Homo sapiens
Biosample type
1461
tissue
402
primary cell
179
in vitro differentiated cells
163
cell line
Organ
24
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
179
AMP
Genome assembly (visualization)
179
hg19
147
GRCh38
Lab
167
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
106
inconsistent ontology term
month_released!
January, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
179 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
10
12
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
4
8
1
induced pluripotent stem cell
9
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