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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
377
DNA binding
12
DNA accessibility
Target of assay
338
transcription factor
88
recombinant protein
57
RNA binding protein
34
histone
34
histone modification
24
chromatin remodeller
17
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
559
bam
502
bigWig
404
fastq
389
bed narrowPeak
340
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
389
Homo sapiens
Biosample type
938
tissue
389
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
308
liver
39
blood
39
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
387
AMP
2
T1D
Genome assembly (visualization)
385
hg19
343
GRCh38
Lab
375
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
389 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
39
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
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