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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1419
ChIP-seq
959
total RNA-seq
250
ATAC-seq
176
single cell RNA-seq
173
DNase-seq
87
RNA microarray
39
pCHi-C
24
WGBS
18
Hi-C
17
snATAC-seq
14
small RNA-seq
9
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
3
October, 2019
2
August, 2021
1
December, 2018
Available data
13
hic
12
bedpe bed3+
1
fastq
Organism
18
Homo sapiens
Biosample type
12
tissue
primary cell
4
in vitro differentiated cells
2
cell line
Organ
6
musculature of body
pancreas
4
limb
3
heart
3
liver
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
18
AMP
Genome assembly (visualization)
13
hg19
Lab
16
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
month_released!
January, 2019
organ_slims!
bone marrow
pancreas
biosample_type!
primary cell
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
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