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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
76
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
42
transcription factor
20
histone
20
histone modification
14
broad histone mark
12
control
6
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
Date released
66
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
144
bam
125
bigWig
113
bed narrowPeak
64
bigBed narrowPeak
58
tsv
42
fastq
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
192
Homo sapiens
Biosample type
109
cell line
73
tissue
10
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
8
T1D
Genome assembly (visualization)
167
GRCh38
133
hg19
Lab
184
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
42
1
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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