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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
55
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
43
transcription factor
10
control
4
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
34
December, 2018
January, 2019
24
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
59
bam
59
fastq
50
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
69
Homo sapiens
Biosample type
43
cell line
18
tissue
8
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2019
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
cell line
GM12878
42
1
tissue
spleen
13
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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