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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
13
ATAC-seq
13
ChIP-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
14
DNA accessibility
13
DNA binding
2
DNA methylation
Target of assay
7
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
January, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
88
txt
83
bam
68
bigWig
59
tsv
17
fastq
16
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
177
Homo sapiens
Biosample type
176
tissue
1
primary cell
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
1
T1D
Genome assembly (visualization)
78
hg19
76
GRCh38
Lab
176
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
January, 2019
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
1
13
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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