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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
14
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
broad histone mark
8
narrow histone mark
6
control
Date released
14
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
7
bigWig
7
tagAlign
6
bed narrowPeak
5
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
31
Homo sapiens
Biosample type
28
tissue
3
primary cell
Organ
302
pancreas
246
liver
226
epithelium
149
kidney
127
heart
93
bone element
90
connective tissue
60
brain
55
eye
47
adipose tissue
41
vasculature
39
blood vessel
31
musculature of body
26
limb
20
lung
13
artery
12
blood
12
bodily fluid
12
nerve
8
embryo
8
skeleton
8
spleen
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
57
hg19
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
January, 2019
target.investigated_as!
broad histone mark
assembly!
GRCh38
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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