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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
5
Hi-C
Assay category
8
Transcription
5
3D chromatin structure
Date released
6
February, 2021
4
July, 2019
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3003
bam
2779
bigWig
1586
tsv
1285
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
primary cell
6
tissue
1
cell line
Organ
5
kidney
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
13
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
1
inconsistent assembly
month_released!
January, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
Hi-C
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
kidney
5
liver
1
cell line
Panc1
1
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