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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
9
single cell RNA-seq
2
Hi-C
1
pCHi-C
Assay category
17
DNA binding
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
18
October, 2019
9
April, 2020
2
March, 2020
Available data
17
bam
12
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tsv
Organism
29
Homo sapiens
Biosample type
19
primary cell
10
tissue
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
9
LungMap
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
20
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
1
audit script error
month_released!
January, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
tissue
lung
9
1
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