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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
429
ChIP-seq
159
total RNA-seq
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
429
DNA binding
162
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
19
August, 2017
18
August, 2021
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2021
Available data
596
bigWig
582
bam
414
bed narrowPeak
389
fastq
353
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
Organism
602
Homo sapiens
Biosample type
329
cell line
247
tissue
14
in vitro differentiated cells
12
primary cell
Organ
602
liver
587
pancreas
564
connective tissue
420
adipose tissue
273
epithelium
176
heart
163
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
13
spleen
7
eye
2
pericardium
1
pituitary gland
Project
602
AMP
Genome assembly (visualization)
602
hg19
528
GRCh38
Lab
587
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2021
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
602 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
tissue
liver
83
147
2
1
1
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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