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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RRBS
Assay category
400
Transcription
19
DNA binding
8
DNA accessibility
1
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
14
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
424
bigWig
422
bam
399
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
428
Homo sapiens
Biosample type
425
tissue
3
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
428
AMP
Genome assembly (visualization)
428
hg19
425
GRCh38
Lab
428
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
January, 2021
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
RRBS
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
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