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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
84
ChIP-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
101
Transcription
84
DNA binding
13
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
23
February, 2023
January, 2021
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
220
Homo sapiens
Biosample type
196
primary cell
19
tissue
5
cell line
Organ
18
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
220
T1D
107
AMP
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
220
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
January, 2021
BIOSAMPLE
ASSAY
220 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
5
11
2
thymus
1
cell line
EndoC_BH1
3
2
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