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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
2
snATAC-seq
Assay category
54
Transcription
13
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
45
May, 2020
23
February, 2023
January, 2021
7
March, 2020
Available data
50
bam
50
bigWig
47
tsv
3
bed narrowPeak
Organism
75
Homo sapiens
Biosample type
45
primary cell
22
tissue
8
cell line
Organ
25
pancreas
3
epithelium
Project
4006
AMP
324
HPAP
75
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
68
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
month_released!
January, 2021
May, 2021
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
snATAC-seq
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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tissue
islet of Langerhans
7
11
2
2
cell line
EndoC_BH1
2
3
1
2
See all biosamples
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