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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
201
Transcription
126
DNA binding
107
DNA accessibility
53
DNA methylation
6
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
54
bed narrowPeak
52
bigWig
42
bam
40
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
1
tsv
Organism
107
Homo sapiens
Biosample type
75
primary cell
20
cell line
12
tissue
Organ
158
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
10
lung
8
limb
6
adipose tissue
5
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
58
AMP
49
HPAP
Genome assembly (visualization)
40
hg19
35
GRCh38
Lab
58
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
month_released!
January, 2021
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
107 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
+ See 3 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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