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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
34
ATAC-seq
19
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
154
DNA binding
36
DNA accessibility
19
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
184
May, 2021
24
May, 2022
23
February, 2023
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
231
Homo sapiens
Biosample type
135
primary cell
47
in vitro differentiated cells
44
tissue
5
cell line
Organ
43
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
124
T1D
107
AMP
Genome assembly (visualization)
142
hg19
84
GRCh38
Lab
2424
AMP-T2D consortium
318
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
January, 2021
files.file_type!
tsv
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
29
11
2
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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