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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
6
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
1
October, 2019
Available data
2916
bam
2755
bigWig
1552
bed narrowPeak
1401
tsv
1211
fastq
942
bigBed narrowPeak
352
tagAlign
304
bed broadPeak
267
bigBed broadPeak
235
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
in vitro differentiated cells
4
primary cell
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
12
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
month_released!
January, 2021
biosample_type!
in vitro differentiated cells
organ_slims!
vasculature
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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