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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
56
single cell RNA-seq
17
pCHi-C
12
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
88
DNA binding
23
DNA accessibility
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
January, 2021
7
March, 2020
5
March, 2023
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
1
hic
Organism
294
Homo sapiens
Biosample type
197
primary cell
89
tissue
11
cell line
2
stem cell
Organ
47
kidney
26
pancreas
19
lung
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
228
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
187
GRCh38
186
hg19
Lab
Klaus Kaestner, Upenn
220
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
month_released!
January, 2021
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bed bedMethyl
award.project!
AMP
BIOSAMPLE
ASSAY
299 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 31 more…
tissue
kidney
47
islet of Langerhans
7
2
2
11
lung
9
10
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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