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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
6
WGBS
4
ATAC-seq
1
DNase-seq
Assay category
118
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
70
histone
70
histone modification
40
broad histone mark
34
transcription factor
29
narrow histone mark
14
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
72
fastq
71
bam
68
bigWig
46
bed narrowPeak
22
tagAlign
11
bed bed3+
6
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
129
Homo sapiens
Biosample type
70
in vitro differentiated cells
59
tissue
Organ
206
pancreas
129
connective tissue
86
brain
69
limb
64
epithelium
61
liver
58
adipose tissue
47
blood vessel
47
vasculature
42
nerve
30
kidney
26
artery
26
musculature of body
21
eye
21
vein
8
heart
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
129
AMP
Genome assembly (visualization)
67
hg19
65
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
January, 2021
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
2
1
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
1
islet of Langerhans
1
subcutaneous adipose tissue
1
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