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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1396
total RNA-seq
428
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
68
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
299
Transcription
68
DNA accessibility
Target of assay
3
control
Date released
112
August, 2021
56
May, 2022
47
September, 2023
45
February, 2021
40
September, 2020
19
April, 2020
16
April, 2018
January, 2021
15
July, 2018
3
December, 2019
3
February, 2023
3
July, 2019
3
May, 2023
2
June, 2018
1
August, 2022
1
November, 2018
1
September, 2018
Available data
141
tsv
95
fastq
73
zippedFastqFolder
36
bam
36
bigWig
14
txt
8
csv
1
bed bed3+
Organism
366
Homo sapiens
Biosample type
200
tissue
165
primary cell
2
in vitro differentiated cells
Organ
93
heart
83
pancreas
epithelium
70
kidney
19
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
2
musculature of body
1
liver
Project
166
AMP
133
HPAP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
37
hg19
36
GRCh38
Lab
149
AMP-T2D consortium
133
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
17
Katalin Susztak, Upenn
2
Kyle Gaulton, UCSD
Audit category:
36
audit script error
8
inconsistent ontology term
month_released!
January, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
367 results
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single cell RNA-seq
snATAC-seq
tissue
kidney
64
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 14 more…
primary cell
Langerhans cell
85
48
pancreatic cell
9
mesenchymal cell
6
pancreatic stellate cell
4
cerebellar granule cell
2
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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