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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
62
ATAC-seq
8
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
3
snATAC-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
Transcription
153
DNA binding
75
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
35
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
70
August, 2017
51
October, 2018
20
November, 2019
18
May, 2022
18
October, 2019
13
February, 2023
11
September, 2018
January, 2021
7
November, 2018
6
March, 2020
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
July, 2019
2
May, 2019
1
August, 2021
1
August, 2022
Available data
189
bam
141
bed narrowPeak
133
bigWig
133
fastq
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
tsv
1
bedpe
1
hdf5
Organism
237
Homo sapiens
Biosample type
206
tissue
23
primary cell
15
cell line
Organ
598
liver
459
pancreas
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
229
AMP
15
T1D
Genome assembly (visualization)
173
hg19
146
GRCh38
Lab
202
AMP-T2D consortium
31
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
month_released!
January, 2021
organ_slims!
epithelium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
snATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
50
58
1
3
4
3
1
1
body of pancreas
35
4
4
2
pancreas
16
2
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
cell line
Panc1
13
1
1
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