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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
9
ATAC-seq
2
DNase-seq
Assay category
85
DNA binding
11
DNA accessibility
Target of assay
64
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
27
December, 2018
15
January, 2019
15
October, 2019
13
February, 2021
12
November, 2018
12
November, 2019
1
March, 2020
1
May, 2021
Available data
216
bam
190
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
96
Homo sapiens
Biosample type
871
tissue
289
primary cell
118
in vitro differentiated cells
96
cell line
2
stem cell
Organ
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
94
AMP
2
T1D
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
96
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
month_released!
January, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
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