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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
105
Transcription
88
DNA binding
13
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
45
May, 2020
23
February, 2023
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
228
Homo sapiens
Biosample type
196
primary cell
23
tissue
9
cell line
Organ
26
pancreas
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4056
AMP
317
HPAP
228
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
220
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
January, 2021
August, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
7
2
11
2
thymus
1
cell line
EndoC_BH1
2
2
3
2
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