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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
130
DNA binding
45
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
54
histone
54
histone modification
51
transcription factor
34
broad histone mark
23
control
20
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
73
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
March, 2020
Available data
174
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
188
Homo sapiens
Biosample type
127
tissue
61
cell line
Organ
938
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
188
AMP
Genome assembly (visualization)
151
hg19
150
GRCh38
Lab
188
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
January, 2021
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
GM12878
60
1
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