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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
12
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
39
DNA binding
12
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
May, 2021
1
January, 2018
1
March, 2020
Available data
54
bam
42
bigWig
27
bed narrowPeak
27
fastq
13
bigBed narrowPeak
12
tsv
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
57
Homo sapiens
Biosample type
27
in vitro differentiated cells
22
primary cell
8
cell line
Organ
877
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
390
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
44
hg19
39
GRCh38
1
hg18
Lab
57
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
January, 2021
May, 2021
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
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