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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
59
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
65
Transcription
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
58
February, 2021
50
May, 2019
23
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
March, 2020
Available data
137
bam
118
bigWig
66
tsv
61
bed narrowPeak
57
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
148
Homo sapiens
Biosample type
90
tissue
58
cell line
primary cell
Organ
751
liver
619
connective tissue
481
adipose tissue
378
pancreas
306
heart
233
brain
167
kidney
148
blood vessel
148
vasculature
146
bone element
90
artery
86
epithelium
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
Genome assembly (visualization)
118
GRCh38
118
hg19
Lab
148
AMP-T2D consortium
month_released!
July, 2018
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
thoracic aorta
16
2
coronary artery
5
1
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cell line
smooth muscle cell of the coronary artery
6
52
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