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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
70
ChIP-seq
47
WGBS
37
single cell RNA-seq
3
Hi-C
Assay category
118
Transcription
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
58
September, 2018
41
May, 2022
38
August, 2017
37
February, 2023
July, 2018
33
April, 2018
16
September, 2020
6
February, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
189
fastq
135
bam
123
bigWig
71
tsv
46
bed narrowPeak
41
zippedFastqFolder
3
bedpe bed3+
3
cool
3
hic
Organism
238
Homo sapiens
Biosample type
303
tissue
238
primary cell
72
cell line
3
in vitro differentiated cells
Organ
282
epithelium
238
pancreas
30
vasculature
29
connective tissue
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
135
AMP
103
HPAP
Genome assembly (visualization)
126
hg19
123
GRCh38
Lab
135
AMP-T2D consortium
103
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
July, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
ChIP-seq
WGBS
single cell RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
13
31
5
1
pancreatic beta cell
21
13
16
3
1
pancreatic ductal cell
4
13
7
pancreatic endocrine cell
23
pancreatic acinar cell
4
8
7
1
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