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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
902
total RNA-seq
258
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1098
Transcription
905
DNA binding
468
DNA accessibility
11
DNA methylation
9
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
275
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1765
bam
1629
bigWig
982
bed narrowPeak
932
tsv
561
bigBed narrowPeak
365
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2581
Homo sapiens
Biosample type
2590
tissue
992
primary cell
650
cell line
386
in vitro differentiated cells
6
stem cell
Organ
540
connective tissue
481
adipose tissue
372
pancreas
354
liver
299
kidney
298
heart
263
brain
158
bone element
128
blood vessel
128
vasculature
121
limb
76
musculature of body
73
artery
56
eye
43
nerve
22
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2497
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1718
GRCh38
1621
hg19
Lab
2238
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
March, 2020
assay_title!
WGBS
BIOSAMPLE
ASSAY
2590 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
2
382
3
liver
145
166
20
1
2
1
1
islet of Langerhans
69
170
66
6
1
7
1
3
4
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
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