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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
786
total RNA-seq
590
ChIP-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
1
DNase-seq
Assay category
802
Transcription
590
DNA binding
159
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
158
August, 2017
157
October, 2019
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
14
October, 2017
13
November, 2018
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1596
bigWig
1587
bam
883
bed narrowPeak
801
tsv
555
bigBed narrowPeak
278
fastq
204
bed bed3+
191
bed broadPeak
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1561
Homo sapiens
Biosample type
1567
tissue
443
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
264
pancreas
235
liver
176
brain
164
heart
100
blood vessel
100
vasculature
97
kidney
66
bone element
60
limb
58
artery
29
nerve
15
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1565
AMP
2
T1D
Genome assembly (visualization)
1567
GRCh38
1479
hg19
Lab
1449
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
1567 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
2
liver
147
75
1
islet of Langerhans
150
25
22
1
kidney
20
75
bone tissue
58
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