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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1558
ChIP-seq
1040
total RNA-seq
301
ATAC-seq
180
DNase-seq
174
single cell RNA-seq
32
pCHi-C
28
WGBS
28
snATAC-seq
19
Hi-C
16
small RNA-seq
11
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
180
DNA accessibility
Date released
162
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Available data
179
bam
179
bed narrowPeak
179
bigBed narrowPeak
179
bigWig
177
bed broadPeak
177
bigBed broadPeak
176
bed bed3+
11
fastq
Organism
180
Homo sapiens
Biosample type
177
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
35
limb
31
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
180
AMP
Genome assembly (visualization)
179
GRCh38
163
hg19
Lab
180
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
July, 2018
audit.ERROR.category!
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
180 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 40 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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