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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
216
DNA binding
37
DNA accessibility
23
Transcription
3
3D chromatin structure
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
11
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
241
bam
220
bigWig
201
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
261
tissue
20
primary cell
Organ
787
liver
707
pancreas
661
connective tissue
488
adipose tissue
396
epithelium
380
heart
328
kidney
281
brain
233
vasculature
229
blood vessel
141
artery
120
limb
83
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
43
nerve
31
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
281
AMP
Genome assembly (visualization)
215
GRCh38
160
hg19
Lab
281
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2018
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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