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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
21
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
8
control
7
histone
7
histone modification
6
transcription factor
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
9
November, 2018
7
December, 2018
7
January, 2019
2
October, 2019
1
March, 2020
1
October, 2017
Available data
25
bam
24
fastq
17
bigWig
15
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tagAlign
1
tsv
Organism
27
Homo sapiens
Biosample type
27
tissue
Organ
790
liver
713
pancreas
663
connective tissue
490
adipose tissue
401
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
27
AMP
Genome assembly (visualization)
17
GRCh38
15
hg19
Lab
27
AMP-T2D consortium
month_released!
July, 2018
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
20
1
2
1
1
islet of Langerhans
1
pituitary gland
1
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