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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
total RNA-seq
ChIP-seq
92
ATAC-seq
37
single cell RNA-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
260
Transcription
103
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
July, 2018
94
August, 2017
57
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
10
November, 2020
7
March, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
October, 2018
1
August, 2022
1
February, 2020
1
February, 2023
1
June, 2018
Available data
336
bam
297
bigWig
256
tsv
216
fastq
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
388
Homo sapiens
Biosample type
240
tissue
87
primary cell
62
cell line
Organ
528
connective tissue
418
adipose tissue
389
pancreas
259
heart
255
kidney
239
liver
208
epithelium
158
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
389
AMP
152
HPAP
30
T1D
Genome assembly (visualization)
337
hg19
313
GRCh38
Lab
346
AMP-T2D consortium
25
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
59
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
July, 2018
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
389 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
157
47
4
1
3
1
1
1
body of pancreas
3
4
4
2
2
pancreas
2
2
1
2
1
1
1
primary cell
pancreatic alpha cell
10
6
5
pancreatic beta cell
10
7
3
pancreatic acinar cell
4
5
7
pancreatic ductal cell
4
4
7
pancreatic delta cell
7
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cell line
EndoC_BH1
31
19
6
1
2
1
Panc1
1
1
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