Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
151
ATAC-seq
59
total RNA-seq
54
single cell RNA-seq
31
DNase-seq
10
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
183
DNA accessibility
115
Transcription
11
DNA methylation
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
55
May, 2021
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
381
bam
371
bigWig
211
bed narrowPeak
192
fastq
120
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
505
Homo sapiens
Biosample type
2544
tissue
647
cell line
505
primary cell
390
in vitro differentiated cells
8
stem cell
Organ
217
epithelium
157
pancreas
36
kidney
35
connective tissue
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
505
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
391
hg19
297
GRCh38
Lab
470
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
assay_title!
Hi-C
BIOSAMPLE
ASSAY
505 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
2
pancreatic alpha cell
13
6
10
5
pancreatic beta cell
13
7
10
3
pancreatic ductal cell
13
4
4
7
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
+ See 77 more…
See all biosamples
Download