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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
198
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
386
Transcription
281
DNA accessibility
255
DNA binding
58
DNA methylation
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
July, 2018
43
April, 2018
October, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
538
bigWig
530
bam
361
fastq
274
bed narrowPeak
220
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
Organism
997
Homo sapiens
Biosample type
2400
tissue
997
primary cell
629
cell line
384
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
306
pancreas
36
connective tissue
25
kidney
18
brain
14
musculature of body
13
heart
13
vasculature
12
liver
8
blood
8
bodily fluid
7
blood vessel
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
472
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
546
hg19
465
GRCh38
Lab
437
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
October, 2019
assay_title!
Hi-C
BIOSAMPLE
ASSAY
997 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
CD8-positive, alpha-beta T cell
33
4
2
1
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