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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
33
ChIP-seq
21
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
184
Transcription
180
DNA accessibility
58
DNA methylation
33
DNA binding
6
3D chromatin structure
Target of assay
26
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
5
March, 2020
3
March, 2023
3
October, 2022
1
August, 2021
1
December, 2017
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
564
bam
365
fastq
297
bed narrowPeak
226
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
40
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
480
Homo sapiens
Biosample type
1001
tissue
475
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
175
epithelium
154
pancreas
8
blood
8
bodily fluid
8
connective tissue
8
kidney
8
vasculature
7
blood vessel
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
314
HPAP
141
AMP
24
T1D
2
community
1
ITG
Genome assembly (visualization)
33
hg19
18
GRCh38
Lab
314
Klaus Kaestner, Upenn
141
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
31
audit script error
17
inconsistent ontology term
month_released!
July, 2018
files.file_type!
bigWig
BIOSAMPLE
ASSAY
482 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
+ See 41 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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