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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
29
total RNA-seq
9
RRBS
4
Hi-C
3
ATAC-seq
2
small RNA-seq
Assay category
74
Transcription
9
DNA methylation
4
3D chromatin structure
3
DNA accessibility
Target of assay
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
41
fastq
25
bigWig
19
zippedFastqFolder
18
bam
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
90
Homo sapiens
Biosample type
90
primary cell
77
tissue
Organ
32
epithelium
19
pancreas
8
connective tissue
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
59
HPAP
31
AMP
Genome assembly (visualization)
31
hg19
21
GRCh38
Lab
59
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
July, 2018
BIOSAMPLE
ASSAY
90 results
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Clear Filters
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
small RNA-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
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