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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
245
total RNA-seq
200
ATAC-seq
139
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
386
Transcription
279
DNA binding
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
563
bigWig
559
bam
334
fastq
295
bed narrowPeak
220
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1007
Homo sapiens
Biosample type
2575
tissue
1007
primary cell
596
cell line
392
in vitro differentiated cells
10
stem cell
Organ
369
epithelium
306
pancreas
37
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
508
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
574
hg19
486
GRCh38
Lab
473
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
organ_slims!
artery
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1007 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
3
16
CD8-positive, alpha-beta T cell
33
4
2
1
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