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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
223
ChIP-seq
198
ATAC-seq
137
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
375
Transcription
280
DNA accessibility
223
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
185
histone
185
histone modification
97
broad histone mark
88
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
47
August, 2017
July, 2018
45
February, 2021
41
April, 2018
41
September, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
491
bigWig
483
bam
316
fastq
246
bed narrowPeak
209
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
959
Homo sapiens
Biosample type
2096
tissue
959
primary cell
649
cell line
296
in vitro differentiated cells
9
stem cell
Organ
352
epithelium
265
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
431
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
504
hg19
414
GRCh38
Lab
396
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
organ_slims!
connective tissue
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
959 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
3
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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