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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
312
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1107
Transcription
312
DNA binding
81
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
164
August, 2021
July, 2018
90
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
32
February, 2023
31
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
19
April, 2020
19
November, 2019
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1791
bam
1656
bigWig
bed narrowPeak
960
tsv
561
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1660
Homo sapiens
Biosample type
1663
tissue
741
primary cell
256
cell line
255
in vitro differentiated cells
8
stem cell
Organ
534
connective tissue
475
adipose tissue
259
pancreas
247
liver
150
bone element
146
kidney
137
heart
73
brain
32
blood vessel
32
vasculature
30
limb
29
musculature of body
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1568
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
860
GRCh38
853
hg19
Lab
1454
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
month_released!
July, 2018
files.file_type!
bedpe bed3+
bed narrowPeak
BIOSAMPLE
ASSAY
1663 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
2
3
1
islet of Langerhans
178
51
31
7
4
1
1
4
liver
167
63
1
3
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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