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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
572
ChIP-seq
391
total RNA-seq
175
DNase-seq
155
ATAC-seq
14
WGBS
14
small RNA-seq
Assay category
572
DNA binding
405
Transcription
330
DNA accessibility
14
DNA methylation
Target of assay
493
histone modification
492
histone
250
narrow histone mark
242
broad histone mark
76
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
162
May, 2020
161
October, 2019
142
August, 2017
July, 2018
92
May, 2019
66
February, 2021
64
April, 2019
64
August, 2021
57
November, 2017
51
July, 2019
40
May, 2024
40
October, 2018
38
May, 2021
38
November, 2019
36
December, 2017
35
February, 2023
21
November, 2018
13
October, 2017
11
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1176
bigWig
1166
bam
872
bed narrowPeak
546
bigBed narrowPeak
405
tsv
255
fastq
198
bed bed3+
189
bed broadPeak
174
bigBed broadPeak
116
tagAlign
64
xls
14
bed bedMethyl
14
bigBed bedMethyl
1
tagAlign bed3+
Organism
1315
Homo sapiens
Biosample type
1321
tissue
486
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
adipose tissue
270
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1319
AMP
2
T1D
Genome assembly (visualization)
1321
GRCh38
1215
hg19
Lab
1203
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1321 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
liver
75
147
2
1
islet of Langerhans
25
150
1
22
kidney
20
13
75
bone tissue
58
coronary artery
3
2
36
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