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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
461
total RNA-seq
254
ATAC-seq
176
DNase-seq
161
single cell RNA-seq
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
834
DNA binding
636
Transcription
461
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
227
August, 2017
193
May, 2020
171
August, 2021
162
June, 2019
July, 2018
115
May, 2019
90
February, 2023
82
November, 2017
80
April, 2019
70
February, 2021
67
July, 2019
59
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1351
bam
1233
bigWig
971
bed narrowPeak
561
tsv
551
bigBed narrowPeak
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2004
Homo sapiens
Biosample type
2012
tissue
1038
primary cell
661
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
adipose tissue
379
pancreas
361
liver
313
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1915
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1321
GRCh38
1214
hg19
Lab
1723
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
adipose tissue
files.file_type!
txt
BIOSAMPLE
ASSAY
2012 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
liver
145
167
20
2
1
1
3
1
1
1
islet of Langerhans
71
172
68
1
7
4
3
1
1
4
kidney
27
75
13
51
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
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